Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_5210
carbon source 4-Hydroxyvalerate (C) (40mM) -2.6
carbon source 4-Hydroxyvalerate (C) (40mM) -2.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.5
temperature Growth at 30C; with MOPS -0.4
carbon source carbon source 3-O-methyl-glucose 50 mM -0.4
pH Growth at pH8 and (C) D-Glucose -0.4
temperature shift Temperature shift 30_to_21; with MOPS -0.4
carbon source butyrate (C) -0.4
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO. -0.4
nitrogen source nitrate (N) -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.4
temperature shift Temperature shift 30_to_25; with MOPS -0.3
nitrogen source nitrite (N) -0.3
carbon source Phenylacetic (C) -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.3
stress Geraniol 1 vol% -0.3
nitrogen source Hydantoin (N) +0.3
carbon source Delta-Decalactone (C) +0.3
carbon source Hexanoic (C) +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs +0.3
mixed carbon source mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.4
nitrogen source D-2-Aminobutyric (N) +0.4
pH pH 8 +0.4
carbon source 3-methyl-1-butanol 0.25 vol% (C) +0.5
carbon source Delta-Decalactone (C) +0.5
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM +0.5
carbon source Delta-Nonalactone (C) +0.7
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PP_5210