Fitness for 1 genes in Pseudomonas putida KT2440

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Group	Condition	PP_5192
carbon source	Valeric (C)	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.4
pH	Growth at pH7 and (C) D-Glucose	-0.4
carbon source	ferulate (C); with MOPS	-0.4
pH	Growth at pH6 and (C) D-Glucose	-0.4
r2a control with 0.2% methanol	R2A control with 0.2% methanol	-0.3
r2a control with 0.2% methanol	R2A control with 0.2% methanol	-0.3
phage	P. putida South MOI 0.1	-0.3
temperature	Growth at 30C; with MOPS	-0.3
toxin	pUC18_phdP1_pSU18T_docP1	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.3
reactor	24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3
carbon source	3-Hydroxydecanoic (C)	+0.3
nitrogen source	nitrate (N)	+0.3
carbon source	3-Hydroxypropionate (C)	+0.3
carbon source	Beta-alanine (C)	+0.3
nitrogen source	nitrite (N)	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.3
carbon source	3-Hydroxyhexanoic (C)	+0.3
carbon source	gluconate (C)	+0.3
nitrogen source	2,6-diaminopimelic (N)	+0.3
pH	pH 9	+0.3
carbon source	Delta-Decalactone (C)	+0.4
carbon source	D-Glucose (C)	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4
carbon source	L-Leucine (C)	+0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6
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