Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_5187
carbon source	carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM	-0.9
carbon source	L-Leucine (C)	-0.7
pH	Growth at pH7 and (C) Trisodium citrate	-0.7
nitrogen source	nitrogen source nitrate 20mM	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.7
carbon source	butyrate (C)	-0.7
temperature shift	Temperature shift 30_to_21; with MOPS	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.6
r2a control with 0.2% methanol	R2A control with 0.2% methanol	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.6
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-0.6
temperature	Growth at 10C; with MOPS	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.5
phage	P. putida Sci small MOI 0.1	-0.5
phage	P. putida PUT10 MOI 1	-0.5
stress	R2A with Fusaric 240 ug/mL	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.5
carbon source	Lignin Monomers (C)	-0.5
carbon source	Lignin Monomers (C)	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.5
no stress control	Growth with no stress	-0.5
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.5
micoeukaryotes	Acanthamoeba sp., muxed culture-2	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6
pH	Growth at pH6 and (C) Trisodium citrate	+0.6
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM	+0.6
pH	Growth at pH6 and (C) Trisodium citrate	+0.6
stress	Growth with Chloride 500 mM; with MOPS	+0.6
micoeukaryotes	Acanthamoeba sp., muxed culture-1	+0.6
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