Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_5161
carbon source Vanillin (C) -3.3
carbon source Vanillin (C) -2.9
carbon source 3-methyl-1-butanol (C) -2.5
carbon source 3-methyl-1-butanol (C) -2.4
pH Valerolactone (C) pH 6.5 -1.7
carbon source 1,3-Butandiol (C) -1.6
carbon source 1,3-Butandiol (C) -1.4
carbon source Levulinic Acid (C) -1.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.3
carbon source 1-Pentanol (C) -1.3
carbon source rac-3-Hydroxypentanoic Acid (C) -1.2
carbon source Glycerol (C) -1.2
carbon source Levulinic Acid (C) -1.1
carbon source Glycerol (C) -1.1
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -1.1
carbon source 3-methyl-1-butanol 0.1 vol% (C) -1.0
carbon source 2-methyl-1-butanol (C) -1.0
stress 1-Pentanol 0.3 vol% -1.0
phage PUT8 MOI 0.1 -1.0
carbon source Butyl stearate (C) -0.9
carbon source 2-methyl-1-butanol (C) -0.9
pH pH 9 -0.9
pH pH 7 -0.9
micoeukaryotes C.elegans, mixed culture-2 +0.9
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +1.0
micoeukaryotes Dictyostellum sp.mixed culture-1 +1.0
micoeukaryotes Acanthamoeba sp., muxed culture-2 +1.3
micoeukaryotes C.elegans, mixed culture-1 +1.5
micoeukaryotes Dictyostellum sp.mixed culture-2 +1.5
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PP_5161