Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_5158
carbon source	Delta-Nonalactone (C)	-1.0
nitrogen source	D-2-Aminobutyric (N)	-0.7
pH	Growth at pH9 and (C) Trisodium citrate	-0.7
nitrogen source	2,6-diaminopimelic (N)	-0.6
reactor	24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.	-0.6
carbon source	ferulate (C); with MOPS	-0.6
carbon source	carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM	-0.6
carbon source	Valerolactone (C)	-0.6
carbon source	Delta-Dodecalactone (C)	-0.6
carbon source	Ethyl decanoate (C)	-0.6
carbon source	Valeric (C)	-0.5
phage	P. putida South MOI 10	-0.5
phage	P. putida Sci Big MOI 0.1	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.5
carbon source	5-Hydroxydodecanoate (C)	-0.5
pH	D-Glucose (C) pH 6.5	-0.5
pH	Growth at pH6 and (C) Trisodium citrate	-0.5
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM	-0.5
carbon source	carbon source 2-Deoxy-D-glucose 50 mM	-0.4
carbon source	5-Hydroxydodecanoate (C)	-0.4
carbon source	Vanillin (C)	-0.4
pH	Growth at pH7 and (C) Trisodium citrate	-0.4
pH	pH 6	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.5
carbon source	Levulinic Acid (C)	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6
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