Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_5145
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-5.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-5.8
dilutelb	LB 0.1x with 55.5 mM D-Glucose	-5.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-4.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-4.9
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.	-4.1
carbon source	2,3-Butanediol (C)	-4.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-4.0
phage	PUT8 MOI 0.1	-4.0
micoeukaryotes	Acanthamoeba sp., muxed culture-1	-3.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-3.8
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.	-3.8
nitrogen source	D-2-Aminobutyric (N)	-3.8
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.	-3.8
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-3.7
nitrogen source	Beta-alanine (N)	-3.7
phage	PUT8 MOI 0.1	-3.7
phage	P. putida PUT10 MOI 1	-3.7
phage	P. putida South MOI 1	-3.7
dilutelb	LB 0.1x with 55.5 mM D-Glucose	-3.6
nitrogen source	D-2-Aminobutyric (N)	-3.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-3.6
phage	P. putida PUT10 MOI 10	-3.6
carbon source	3-methyl-2-oxopentanoic (C)	+3.7
nitrogen source	L-Methionine (N)	+4.0
carbon source	3-methyl-2-oxopentanoic (C)	+4.3
carbon source	Hexanoic (C)	+4.9
carbon source	propionate (C)	+5.3
carbon source	4-Hydroxyvalerate (C) (40mM)	+5.4
carbon source	4-Hydroxyvalerate (C) (40mM)	+6.1
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