Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_5107
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.9
pH Growth at pH6 and (C) D-Glucose -1.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -1.4
pH D-Glucose (C) pH 6 -1.3
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -1.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -1.2
carbon source 3-methyl-1-butanol 0.25 vol% (C) -1.1
stress Growth with Chloride 500 mM; with MOPS -1.1
carbon source Crotonic (C) -1.0
nitrogen source Propiolactam (N) -1.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.9
carbon source DL-3-Hydroxybutyric (C) -0.9
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.9
temperature shift Temperature shift 30_to_21; with MOPS -0.8
nitrogen source Ammonium chloride (N) -0.8
carbon source Phenylacetic (C) -0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.8
temperature shift Temperature shift 10_to_25; with MOPS -0.7
r2a control with 0.2% methanol R2A control with 0.2% methanol -0.7
pH Growth at pH6 and (C) Trisodium citrate +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.8
carbon source 1,3-Butandiol (C) +0.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.8
carbon source 3-Hydroxydecanoic (C) +0.8
carbon source Beta-alanine (C) +0.8
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.8
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM +0.8
carbon source L-Phenylalanine 5 mM (C) +0.9
micoeukaryotes Tetrahymena sp., Mixed culture-2 +0.9
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PP_5107