Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_5063
carbon source	Cholinium lysinate (C)	-1.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-1.3
carbon source	L-Alanine (C)	-1.3
nitrogen source	Propandiamine (N)	-1.3
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-1.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-1.2
nitrogen source	Choline chloride (N)	-1.1
nitrogen source	NAG (N); with MOPS	-1.1
nitrogen source	Choline chloride (N)	-1.1
phage	P. putida Sci small MOI 0.1	-1.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-1.0
nitrogen source	NAG (N); with MOPS	-1.0
temperature	Growth at 25C	-0.9
pH	Growth at pH6 and (C) Trisodium citrate	-0.9
micoeukaryotes	Tetrahymena sp., Mixed culture-1	-0.9
nitrogen source	Propandiamine (N)	-0.9
carbon source	Ferulic Acid (C)	-0.9
carbon source	BC Lignin Sorghum 20 vol% (C)	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.9
nitrogen source	2,6-diaminopimelic (N)	+0.9
phage	P. putida South MOI 0.1	+0.9
phage	P. putida PUT10 MOI 10	+0.9
carbon source	Valerolactone (C)	+0.9
nitrogen source	2,6-diaminopimelic (N)	+0.9
reactor	40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.	+1.1
phage	P. putida South MOI 1	+1.1
reactor	24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.	+1.1
phage	P. putida South MOI 0.1	+1.2
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay	+1.3
pH	Valerolactone (C) pH 6.5	+1.3
		remove PP_5063