Fitness for 1 genes in Pseudomonas putida KT2440

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Group	Condition	PP_5052
carbon source	Tween 20 (C)	-3.1
carbon source	Trisodium citrate (C)	-2.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-1.5
carbon source	Butyl stearate (C)	-1.4
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-1.3
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-1.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-1.1
carbon source	acetate (C)	-1.0
nitrogen source	NAG (N)	-1.0
lb outgrowth control	LB outgrowth control	-1.0
nitrogen source	Ammonium chloride (N)	-1.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-1.0
temperature shift	Temperature shift 10_to_30; with MOPS	-0.9
temperature shift	Temperature shift 30_to_21; with MOPS	-0.9
nitrogen source	Ammonium chloride and TNT (N)	-0.9
carbon source	Octanoic (C)	-0.9
nitrogen source	TNT (N)	-0.9
reactor	24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.	+0.9
carbon source	L-Lysine 10 mM (C)	+0.9
carbon source	3-methyl-1-butanol 0.1 vol% (C)	+1.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+1.0
pH	pH 6	+1.0
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.1
carbon source	carbon source Bisabolene 48.9 mM	+1.1
stress	Growth with Chloride 500 mM; with MOPS	+1.1
carbon source	D-Lysine 10 mM (C)	+1.2
phage	P. putida Sci small MOI 0.1	+1.2
phage	P. putida PUT 7 MOI 1	+1.3
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