Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_5032
carbon source	L-Histidine (C)	-4.7
temperature	Growth at 25C	-0.9
nitrogen source	L-Histidine (N)	-0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.7
carbon source	Rhamnogalacturonan - from potato (C)	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.6
carbon source	carbon source Bisabolene 48.9 mM	-0.5
nitrogen source	Urea (N); with MOPS	-0.5
pH	Growth at pH7 and (C) Trisodium citrate	-0.5
carbon source	Lignin Monomers (C)	-0.5
pH	Growth at pH6 and (C) Trisodium citrate	+0.5
nitrogen source	Ammonium chloride and TNT (N)	+0.5
no stress control	Growth with no stress	+0.5
no stress control	Growth with no stress	+0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.6
carbon source	1,4-Butanediol (C)	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6
phage	P. putida Sci small MOI 0.1	+0.6
nitrogen source	Ammonium chloride and TNT (N)	+0.6
carbon source	D-Glucose (C)	+0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.6
nitrogen source	NAG (N); with MOPS	+0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.6
carbon source	D-Glucose (C); with MOPS	+0.7
reactor	48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.	+0.7
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7
phage	P. putida Sci small MOI 0.1	+0.8
pH	Growth at pH6 and (C) D-Glucose	+0.8
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