Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_5024
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-2.3
carbon source	3-methyl-1-butanol (C)	-0.9
carbon source	L-Lysine (C)	-0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.7
temperature shift	Temperature shift 30_to_21; with MOPS	-0.6
temperature shift	Temperature shift 10_to_30; with MOPS	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM	-0.5
carbon source	Delta-Decalactone (C)	+0.5
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6
nitrogen source	Propandiamine (N)	+0.6
nitrogen source	DL-2-Aminobutyric (N)	+0.6
stress	Growth with Chloride 500 mM; with MOPS	+0.6
carbon source	L-Leucine (C)	+0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.6
carbon source	L-Leucine (C)	+0.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.8
nitrogen source	D-2-Aminobutyric (N)	+0.8
stress	Growth with Chloride 500 mM; with MOPS	+0.8
carbon source	4-Hydroxyvalerate (C) (40mM)	+0.8
carbon source	4-Hydroxyvalerate (C) (40mM)	+0.9
micoeukaryotes	Dictyostellum sp.mixed culture-1	+0.9
micoeukaryotes	C.elegans, mixed culture-2	+0.9
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.0
micoeukaryotes	C.elegans, mixed culture-1	+1.0
micoeukaryotes	Acanthamoeba sp., muxed culture-2	+1.2
micoeukaryotes	Dictyostellum sp.mixed culture-2	+1.3
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