Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_5022
nitrogen source	nitrogen source nitrite 1mM	-4.9
carbon source	Valeric (C)	-4.7
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-4.5
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-4.4
carbon source	D-Glucose (C)	-4.3
carbon source	butyrate (C)	-2.8
carbon source	D-Glucose (C); with MOPS	-2.1
phage	P. putida PUT 7 MOI 1	-2.1
nitrogen source	Urea (N)	-2.0
nitrogen source	D-2-Aminobutyric (N)	-1.8
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.8
pH	Growth at pH8 and (C) D-Glucose	-1.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-1.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.6
temperature shift	Temperature shift 10_to_25	-1.6
temperature shift	Temperature shift 30_to_25; with MOPS	-1.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-1.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-1.5
pH	D-Glucose (C) pH 7	-1.4
reactor	40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO.	-1.4
temperature shift	Temperature shift 30_to_10; with MOPS	-1.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.3
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	-1.3
micoeukaryotes	Dictyostellum sp.mixed culture-1	+1.3
nitrogen source	D-2-Aminobutyric (N)	+1.4
carbon source	L-Phenylalanine 5 mM (C)	+1.5
micoeukaryotes	Acanthamoeba sp., muxed culture-2	+1.7
pH	Growth at pH9 and (C) Trisodium citrate	+1.7
micoeukaryotes	C.elegans, mixed culture-2	+1.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+1.8
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