Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_5000
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -4.4
micoeukaryotes C.elegans, mixed culture-2 -4.4
nitrogen source Urea (N); with MOPS -3.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -3.5
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -3.5
pH Growth at pH6 and (C) Trisodium citrate -3.4
nitrogen source Propandiamine (N) -3.3
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -2.8
temperature shift Temperature shift 10_to_25 -2.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -2.7
carbon source carbon source D-Glucose 55.5 mM -2.4
carbon source 3-methyl-1-butanol 0.1 vol% (C) -2.4
phage P. putida Sci small MOI 0.1 -2.3
carbon source Mucic (C) -2.2
temperature Growth at 25C -2.2
carbon source D-Glucose (C) with 20AA_mix_minus_Asn -2.1
stress R2A with Fusaric 480 ug/mL -2.1
nitrogen source 2,6-diaminopimelic (N) -2.1
nitrogen source nitrogen source nitrite 1mM -1.9
pH pH 6 -1.9
nitrogen source nitrogen source nitrate 5mM -1.9
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.8
carbon source butyrate (C) -1.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.7
carbon source p-Coumaric (C) -1.7
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.6
stress MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL -1.6
carbon source Delta-Undecalactone (C) -1.6
pH Growth at pH9 and (C) Trisodium citrate +1.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +1.8
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PP_5000