Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_4997
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -2.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -2.5
phage P. putida South MOI 10 -2.5
carbon source ferulate (C); with MOPS -2.3
carbon source L-Glutamic (C) -2.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X -2.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -2.2
pH pH 4 -2.2
carbon source D-Glucose (C); with MOPS -2.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -2.1
time series Timeseries; MAX condition; Bioreplicate 1; Time 5hrs; Measurement -2.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -2.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -2.0
temperature Growth at 30C -2.0
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 4-benzoyl-L-phenylalanine 5 mM -1.9
nitrogen source Hydantoin (N) -1.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -1.9
carbon source 5-Hydroxydodecanoate (C) -1.8
nitrogen source Propandiamine (N) -1.7
nitrogen source Ammonium chloride (N) -1.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -1.7
carbon source rac-3-Hydroxypentanoic Acid (C) -1.7
pH Growth at pH7 and (C) Trisodium citrate -1.6
stress Growth with Chloride 200 mM; with MOPS -1.6
pH Growth at pH6 and (C) Trisodium citrate -1.6
temperature shift Temperature shift 10_to_25 -1.6
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -1.6
nitrogen source D-2-Aminobutyric (N) +1.7
nitrogen source D-2-Aminobutyric (N) +2.3
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PP_4997