Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4952
phage	PUT8 MOI 0.1	-5.1
pH	Growth at pH6 and (C) D-Glucose	-4.2
carbon source	Trisodium citrate (C)	-4.2
nitrogen source	nitrate (N)	-4.1
nitrogen source	NAG (N); with MOPS	-4.1
carbon source	2-Keto-D-gluconic hemicalcium salt (C)	-3.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-3.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-2.8
nitrogen source	D-2-Aminobutyric (N)	-2.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-2.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-2.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-2.5
nitrogen source	2,6-diaminopimelic (N)	-2.3
carbon source	Valerolactone (C)	-2.3
carbon source	L-Leucine (C)	-2.3
nitrogen source	Ammonium chloride (N)	-2.3
carbon source	Glutaric (C)	-2.2
carbon source	Valerolactone (C)	-2.2
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-2.2
phage	P. putida PUT10 MOI 10	-2.1
temperature shift	Temperature shift 30_to_10	-2.1
carbon source	Delta-Decalactone (C)	-2.1
phage	P. putida Sci Big MOI 0.1	-2.0
temperature shift	Temperature shift 30_to_10; with MOPS	-2.0
pH	D-Glucose (C) pH 6	-2.0
pH	Growth at pH7 and (C) D-Glucose	-1.9
reactor	24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.	-1.9
temperature shift	Temperature shift 30_to_10; with MOPS	-1.9
carbon source	3-Hydroxydecanoic (C)	-1.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.9
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