Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_4948
carbon source Delta-Nonalactone (C) -3.2
carbon source Delta-Decalactone (C) -3.0
carbon source Delta-Decalactone (C) -2.8
carbon source Delta-Undecalactone (C) -2.1
carbon source Delta-Undecalactone (C) -2.0
carbon source 5-Hydroxydodecanoate (C) -0.5
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay -0.5
carbon source 5-Hydroxydodecanoate (C) -0.4
pH Growth at pH8 and (C) D-Glucose -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.4
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.4
carbon source Delta-Dodecalactone (C) -0.4
carbon source Delta-Dodecalactone (C) -0.4
nitrogen source 2,6-diaminopimelic (N) -0.4
carbon source D-Glucose (C); with MOPS +0.3
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM +0.3
carbon source 1,3-Hexanediol (C) +0.4
temperature shift Temperature shift 30_to_10; with MOPS +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.4
carbon source butyrate (C) +0.4
nitrogen source no extra (N); with MOPS +0.4
temperature shift Temperature shift 30_to_34; with MOPS +0.4
stress MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL +0.4
nitrogen source D-2-Aminobutyric (N) +0.5
stress MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM +0.5
nitrogen source NAG (N); with MOPS +0.6
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6
nitrogen source 2,6-diaminopimelic (N) +0.6
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PP_4948