Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4929
phage	P. putida Missley MOI 0.1	-1.5
phage	P. putida Sci small MOI 0.1	-1.4
carbon source	carbon source 3-O-methyl-glucose 10 mM	-1.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-1.0
carbon source	D-Glucose (C)	-1.0
stress	MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL	-1.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-1.0
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.9
temperature shift	Temperature shift 10_to_30; with MOPS	-0.9
pH	Growth at pH6 and (C) Trisodium citrate	-0.9
carbon source	L-Lysine 10 mM (C)	-0.8
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-0.8
carbon source	Valeric (C)	-0.8
no stress control	Growth with no stress	-0.8
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.8
nitrogen source	2,6-diaminopimelic (N)	-0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.8
stress	MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL	-0.7
carbon source	D-Glucose (C) with 20AA_mix_minus_Cys	-0.7
carbon source	L-Phenylalanine 5 mM (C)	-0.7
nitrogen source	nitrogen source nitrite 0.5mM	-0.7
carbon source	1,3-Hexanediol (C)	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.6
temperature shift	Temperature shift 30_to_10	-0.6
carbon source	carbon source 2-Deoxy-D-glucose 50 mM	-0.6
carbon source	BC Lignin Sorghum 20 vol% (C)	+0.7
stress	MOPS minimal media_Glucose20mM with PHB-HV-HH 0.1 mg/mL	+0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.7
carbon source	Tween 20 (C)	+0.7
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.9
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