Fitness for 1 genes in Pseudomonas putida KT2440

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Group	Condition	PP_4920
nitrogen source	NAG (N); with MOPS	-1.0
carbon source	acetate (C)	-0.7
pH	Growth at pH7 and (C) Trisodium citrate	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.6
carbon source	Tween 20 (C)	-0.6
carbon source	4-Aminobutyric 10 mM (C)	-0.5
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	-0.5
temperature shift	Temperature shift 30_to_4; with MOPS	-0.5
carbon source	3-methyl-3-buten-1-ol 0.25 vol% (C)	-0.5
stress	Growth with Chloride 500 mM; with MOPS	-0.5
pH	Growth at pH6 and (C) D-Glucose	-0.4
pH	Growth at pH8 and (C) Trisodium citrate	-0.4
reactor	40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO.	+0.4
carbon source	Delta-Dodecalactone (C)	+0.5
phage	P. putida Missley MOI 0.1	+0.5
reactor	48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.	+0.5
carbon source	Valerolactone (C)	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.5
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	+0.5
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	+0.5
carbon source	Trisodium citrate 10 mM (C)	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.5
pH	Growth at pH6 and (C) D-Glucose	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.5
carbon source	Delta-Nonalactone (C)	+0.6
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.6
carbon source	ferulate (C); with MOPS	+0.6
nitrogen source	2,6-diaminopimelic (N)	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6
		remove PP_4920