Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_4871
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -3.9
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay -1.6
nitrogen source nitrite (N) -1.2
nitrogen source Ammonium chloride (N) -1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.1
carbon source Valerolactone (C) -1.0
carbon source 4-Aminobutyric 10 mM (C) -0.9
carbon source 4-Hydroxyvalerate (C) (40mM) -0.9
pH Growth at pH7 and (C) Trisodium citrate -0.9
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.9
nitrogen source no extra (N); with MOPS -0.9
carbon source Tween 20 (C) -0.9
carbon source Myristic (C) -0.9
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8
carbon source carbon source 4-vinylphenol 0.1 mM -0.8
carbon source D-Fructose (C) -0.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.8
carbon source L-Phenylalanine 5 mM (C) +0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.8
nitrogen source TNT (N) +0.8
carbon source D-Glucose (C); with MOPS +0.8
nitrogen source Ammonium chloride (N) +0.9
temperature shift Temperature shift 30_to_21; with MOPS +0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.9
micoeukaryotes Tetrahymena sp., Mixed culture-2 +0.9
carbon source 1,3-Butandiol (C) +0.9
nitrogen source 2,6-diaminopimelic (N) +1.0
phage PUT 8 MOI 1 +1.1
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. +1.1
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PP_4871