Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4854
pH	Growth at pH6 and (C) D-Glucose	-0.6
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5
nitrogen source	D-2-Aminobutyric (N)	-0.4
temperature shift	Temperature shift 10_to_25; with MOPS	-0.4
carbon source	4-Aminobutyric 10 mM (C)	-0.4
carbon source	1,3-Butandiol (C)	-0.4
carbon source	Sebacic (C)	-0.4
phage	P. putida South MOI 1	-0.4
temperature shift	Temperature shift 30_to_10; with MOPS	-0.4
nitrogen source	Urea (N)	-0.3
nitrogen source	Ammonium chloride (N)	-0.3
dilutelb	LB 0.1x with 55.5 mM D-Glucose	-0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.3
pH	pH 8	+0.3
stress	R2A with Fusaric 480 ug/mL	+0.3
stress	Cholinium alpha ketoglutarate 10 vol%	+0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4
pH	pH 4	+0.4
pH	Growth at pH7 and (C) Trisodium citrate	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.4
nitrogen source	Urea (N); with MOPS	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.4
pH	Valerolactone (C) pH 6.5	+0.4
carbon source	ferulate (C); with MOPS	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.6
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.6
		remove PP_4854