Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4846
nitrogen source	NAG (N); with MOPS	-3.5
carbon source	D-Glucose (C)	-1.4
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-1.3
nitrogen source	Urea (N)	-1.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.2
temperature shift	Temperature shift 30_to_25; with MOPS	-1.1
carbon source	L-Glutamic (C)	-1.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.9
temperature	Growth at 30C	-0.9
carbon source	1,3-Butandiol (C)	-0.9
microaerobic m9	microaerobic M9	-0.8
nitrogen source	NAG (N)	-0.7
temperature	Growth at 30C; with MOPS	-0.7
pH	Growth at pH7 and (C) D-Glucose	-0.7
nitrogen source	Ammonium chloride (N)	+0.7
nitrogen source	2,6-diaminopimelic (N)	+0.7
pH	Growth at pH9 and (C) Trisodium citrate	+0.7
carbon source	Delta-Undecalactone (C)	+0.7
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	+0.7
pH	pH 6	+0.8
stress	Growth with Chloride 200 mM	+0.8
carbon source	carbon source 3-O-methyl-glucose 10 mM	+0.8
temperature shift	Temperature shift 10_to_30	+0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.8
carbon source	carbon source 2-Deoxy-D-glucose 50 mM	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.0
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.	+1.0
pH	pH 8	+1.1
pH	pH 7	+1.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+1.2
		remove PP_4846