Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4844
carbon source	ferulate (C); with MOPS	-1.8
nitrogen source	Propiolactam (N)	-1.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.0
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.0
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.9
nitrogen source	nitrogen source nitrite 1mM	-0.9
carbon source	carbon source 3-O-methyl-glucose 50 mM	-0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.8
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.7
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.	-0.7
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-0.7
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.7
temperature	Growth at 30C; with MOPS	-0.7
nitrogen source	Ammonium chloride (N)	+0.7
carbon source	D-Glucose (C); with MOPS	+0.7
pH	Growth at pH6 and (C) Trisodium citrate	+0.7
pH	D-Glucose (C) pH 6	+0.8
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay	+0.8
stress	MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM	+0.8
phage	P. putida Sci small MOI 0.1	+0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.8
stress	MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL	+0.8
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.9
temperature shift	Temperature shift 30_to_25	+0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.9
carbon source	D-Glucose (C)	+1.0
stress	MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL	+1.0
carbon source	DL-3-Hydroxyisobutyric (C)	+1.0
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