Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4812
phage	P. putida South MOI 0.1	-0.5
phage	P. putida PUT10 MOI 1	-0.5
phage	P. put South MOI 10	-0.4
phage	PUT8 MOI 0.1	-0.4
phage	P. putida Missley MOI 0.1	-0.4
phage	PUT 8 MOI 1	-0.4
carbon source	ferulate (C); with MOPS	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3
phage	P. putida South MOI 1	-0.3
phage	PUT8 MOI 0.1	-0.3
pH	Growth at pH7 and (C) Trisodium citrate	-0.3
nitrogen source	2,6-diaminopimelic (N)	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3
carbon source	butyrate (C)	-0.3
nitrogen source	nitrite (N)	-0.3
phage	P. put PUT 10 MOI 10	-0.3
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.3
pH	Growth at pH6 and (C) Trisodium citrate	+0.3
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM	+0.3
carbon source	DL-3-Hydroxyisobutyric (C)	+0.3
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3
carbon source	L-tyrosine 5 mM (C)	+0.3
carbon source	L-tyrosine 5 mM (C)	+0.3
temperature shift	Temperature shift 30_to_25; with MOPS	+0.3
pH	Growth at pH6 and (C) Trisodium citrate	+0.3
phage	P. putida Sci small MOI 0.1	+0.3
carbon source	DL-3-Hydroxyisobutyric (C)	+0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.4
		remove PP_4812