Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_4760
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.5
carbon source Myristic (C) -1.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.3
pH Growth at pH6 and (C) Trisodium citrate -1.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.2
carbon source Mucic (C) -1.2
temperature shift Temperature shift 30_to_25 -1.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.1
carbon source 4-Aminobutyric 10 mM (C) -1.1
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.9
carbon source Tween 20 (C) -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.9
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.9
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.9
nitrogen source nitrate (N) -0.9
phage P. putida Sci small MOI 0.1 -0.9
carbon source ferulate (C); with MOPS +0.8
temperature shift Temperature shift 10_to_30; with MOPS +0.8
time series Timeseries; MIN condition; Bioreplicate 1; Time 7hrs; Measurement +0.8
stress Growth with Chloride 500 mM; with MOPS +0.8
pH Growth at pH6 and (C) D-Glucose +0.9
pH pH 4 +0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs +0.9
nitrogen source Ammonium chloride (N) +0.9
carbon source 3-Hydroxydecanoic (C) +0.9
pH Growth at pH7 and (C) Trisodium citrate +1.0
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.0
carbon source carbon source 3-O-methyl-glucose 50 mM +1.1
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay +1.1
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay +1.3
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PP_4760