Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_4735
carbon source 1,2-Propanediol (C) -4.9
carbon source 1,2-Propanediol (C) -3.7
carbon source Trisodium citrate (C) -0.8
carbon source ferulate (C); with MOPS -0.7
carbon source carbon source 4-vinylphenol 0.1 mM -0.6
stress MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL -0.6
temperature shift Temperature shift 30_to_25; with MOPS -0.5
pH Growth at pH8 and (C) D-Glucose -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.5
nitrogen source DL-2-Aminobutyric (N) -0.5
pH Valerolactone (C) pH 6.5 -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.5
no stress control Growth with no stress -0.4
temperature Growth at 25C; with MOPS -0.4
carbon source Sorghum Hydrolysate (C) -0.4
carbon source Sorghum Hydrolysate (C) -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.4
carbon source L-Phenylalanine 5 mM (C) +0.4
phage P. putida Missley MOI 0.1 +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.4
carbon source Nonanoic (C) +0.4
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.5
micoeukaryotes Tetrahymena sp., Mixed culture-2 +0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.5
no stress control Growth with no stress +0.5
phage P. putida Sci small MOI 0.1 +0.6
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6
nitrogen source 2,6-diaminopimelic (N) +0.7
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PP_4735