Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_4694
nitrogen source Propandiamine (N) -0.8
nitrogen source Beta-alanine (N) -0.7
nitrogen source Propandiamine (N) -0.6
nitrogen source D-2-Aminobutyric (N) -0.6
nitrogen source Beta-alanine (N) -0.6
nitrogen source nitrogen source nitrate 5mM -0.5
pH Valerolactone (C) pH 6.5 -0.4
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM +0.4
pH pH 5 +0.4
carbon source carbon source D-Glucose 55.5 mM +0.4
carbon source L-Glutamine (C) +0.5
carbon source propionate (C) +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5
nitrogen source DL-2-Aminobutyric (N) +0.5
carbon source Lignin Monomers (C) +0.5
carbon source carbon source 4-vinylphenol 0.1 mM +0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.5
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. +0.5
carbon source L-Alanine (C) +0.5
carbon source Levulinic Acid (C) +0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.5
carbon source carbon source 3-O-methyl-glucose 50 mM +0.5
carbon source carbon source Bisabolene 48.9 mM +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.6
pH pH 6 +0.6
pH pH 9 +0.6
nitrogen source DL-2-Aminobutyric (N) +0.7
carbon source Lignin Monomers (C) +0.7
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PP_4694