Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4687
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-1.3
reactor	40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO.	-1.0
carbon source	ferulate (C); with MOPS	-1.0
pH	Growth at pH6 and (C) D-Glucose	-1.0
nitrogen source	2,6-diaminopimelic (N)	-1.0
temperature shift	Temperature shift 10_to_30; with MOPS	-0.9
temperature shift	Temperature shift 10_to_30; with MOPS	-0.9
carbon source	carbon source 3-O-methyl-glucose 50 mM	-0.8
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-0.8
temperature	Growth at 10C; with MOPS	-0.8
reactor	48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.	-0.8
stress	Growth with Chloride 500 mM; with MOPS	-0.7
pH	Growth at pH6 and (C) D-Glucose	-0.7
pH	Growth at pH6 and (C) D-Glucose	-0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.7
no stress control	Growth with no stress	-0.6
supernatant	Supernatant; Paenibacillus sp. UNCCL52 spent media 0.5x and Ferric chloride 1 uM	-0.6
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	-0.6
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.6
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6
r2a control with 0.2% methanol	R2A control with 0.2% methanol	+0.6
pH	Growth at pH7 and (C) D-Glucose	+0.6
phage	P. putida Sci small MOI 0.1	+0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.6
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM	+0.6
nitrogen source	nitrogen source nitrite 0.5mM	+0.6
phage	P. put PUT 10 MOI 0.1	+0.6
phage	P. putida Sci small MOI 0.1	+0.7
carbon source	3-methyl-1-butanol 0.1 vol% (C)	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+1.0
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