Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4634
pH	Growth at pH7 and (C) D-Glucose	-0.8
nitrogen source	D-2-Aminobutyric (N)	-0.6
nitrogen source	2,6-diaminopimelic (N)	-0.6
carbon source	3-methyl-1-butanol 0.25 vol% (C)	-0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5
carbon source	1,3-Butandiol (C)	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.5
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-0.5
carbon source	carbon source 3-O-methyl-glucose 50 mM	-0.4
pH	pH 5	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4
nitrogen source	nitrogen source nitrite 0.5mM	-0.4
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.3
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	+0.4
pH	Growth at pH7 and (C) Trisodium citrate	+0.4
stress	Growth with Chloride 500 mM; with MOPS	+0.4
pH	Growth at pH6 and (C) Trisodium citrate	+0.4
pH	Growth at pH6 and (C) D-Glucose	+0.4
nitrogen source	Urea (N)	+0.4
phage	P. put South MOI 10	+0.4
nitrogen source	nitrate (N)	+0.4
temperature shift	Temperature shift 10_to_25; with MOPS	+0.4
nitrogen source	Ammonium chloride (N)	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6
nitrogen source	D-2-Aminobutyric (N)	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.7
		remove PP_4634