Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_4632
carbon source 3-methyl-1-butanol 0.1 vol% (C) -2.0
nitrogen source DL-2-Aminobutyric (N) -1.8
nitrogen source DL-2-Aminobutyric (N) -1.8
nitrogen source D-2-Aminobutyric (N) -1.7
nitrogen source 2,6-diaminopimelic (N) -1.4
nitrogen source nitrogen source nitrate 5mM -1.2
pH pH 7 -1.1
carbon source 3-methyl-1-butanol (C) -1.1
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.1
carbon source carbon source D-Glucose 55.5 mM -1.1
carbon source Lignin Monomers (C) -1.1
nitrogen source Beta-alanine (N) -1.0
nitrogen source D-2-Aminobutyric (N) -1.0
temperature shift Temperature shift 30_to_4; with MOPS -1.0
stress pinene 10 vol% -0.9
carbon source Valerolactone (C) -0.9
nitrogen source Beta-alanine (N) -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.8
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO. -0.8
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8
micoeukaryotes Tetrahymena sp., Mixed culture-2 -0.8
carbon source Levulinic Acid (C) -0.8
carbon source carbon source 2-Deoxy-D-glucose 100 mM -0.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.7
carbon source Soil Extract with D-Glucose 10 mM; 30C; then outgrowth in LB -0.7
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay -0.7
supernatant Supernatant; Burkholderia bryophila 376MFSha3.1 spent media 0.5x -0.7
carbon source Succinic Acid (C) +0.7
pH Growth at pH7 and (C) Trisodium citrate +0.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.9
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PP_4632