Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4564
pH	Growth at pH6 and (C) D-Glucose	-1.3
phage	P. putida South MOI 10	-1.1
stress	MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL	-1.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.0
nitrogen source	2,6-diaminopimelic (N)	-0.9
nitrogen source	no extra (N); with MOPS	-0.8
nitrogen source	nitrate (N)	-0.8
pH	pH 5	-0.8
pH	Growth at pH9 and (C) Trisodium citrate	-0.8
nitrogen source	Ammonium chloride (N); with MOPS	-0.7
pH	Growth at pH6 and (C) Trisodium citrate	-0.7
phage	P. putida Sci small MOI 0.1	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.7
pH	Growth at pH9 and (C) Trisodium citrate	-0.7
carbon source	L-Alanine (C)	-0.7
stress	Growth with Chloride 500 mM; with MOPS	-0.6
stress	MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.6
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay	-0.6
carbon source	D-Glucose (C)	-0.6
pH	Growth at pH8 and (C) D-Glucose	+0.6
nitrogen source	4-Aminobutyric (N)	+0.6
no stress control	Growth with no stress	+0.6
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.7
pH	Growth at pH9 and (C) D-Glucose	+0.7
pH	Growth at pH7 and (C) Trisodium citrate	+0.7
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.7
pH	Valerolactone (C) pH 6.5	+0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.9
		remove PP_4564