Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4547
nitrogen source	Propandiamine (N)	-5.9
nitrogen source	Propandiamine (N)	-5.3
carbon source	Decanoic (C)	-0.8
carbon source	Octanoic (C)	-0.7
carbon source	Nonanoic (C)	-0.6
carbon source	D-Glucose (C); with MOPS	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.5
nitrogen source	D-2-Aminobutyric (N)	-0.5
carbon source	1,3-Butandiol (C)	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5
carbon source	Hexanoic (C)	-0.5
reactor	48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.	-0.5
pH	Growth at pH7 and (C) D-Glucose	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4
nitrogen source	NAG (N); with MOPS	-0.4
stress	Butanol 0.6 vol%	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4
carbon source	Valerolactone (C)	-0.4
carbon source	Heptanoic (C)	-0.4
pH	Growth at pH8 and (C) D-Glucose	-0.4
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-0.4
carbon source	Ethyl decanoate and D-Glucose (C)s	-0.4
carbon source	Decanoic (C)	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.4
nitrogen source	no extra (N)	-0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4
phage	P. putida South MOI 10	-0.4
carbon source	Decanoic (C)	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5
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