Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4541
nitrogen source	Urea (N)	-1.3
carbon source	L-Phenylalanine 5 mM (C)	-1.1
carbon source	3-methyl-1-butanol 0.25 vol% (C)	-1.1
carbon source	3-methyl-3-buten-1-ol 0.1 vol% (C)	-1.0
carbon source	ferulate (C); with MOPS	-1.0
pH	Growth at pH6 and (C) D-Glucose	-1.0
pH	pH 8	-0.9
phage	P. putida Sci small MOI 0.1	-0.9
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-0.8
carbon source	2-methyl-1-butanol (C)	-0.8
stress	R2A with Fusaric 480 ug/mL	-0.8
temperature	Growth at 30C; with MOPS	-0.7
carbon source	Delta-Decalactone (C)	-0.7
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.7
carbon source	4-Aminobutyric 10 mM (C)	-0.7
phage	P. putida South MOI 0.1	-0.7
pH	Valerolactone (C) pH 6.5	-0.7
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.7
phage	P. putida Sci Big MOI 0.1	-0.7
carbon source	Glucose (C) (40mM)	-0.7
carbon source	Rhamnogalacturonan - from potato (C)	-0.6
carbon source	carbon source 2-Deoxy-D-glucose 50 mM	-0.6
stress	Growth with Chloride 500 mM; with MOPS	-0.6
phage	P. putida PUT10 MOI 1	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.7
nitrogen source	D-2-Aminobutyric (N)	+0.7
temperature shift	Temperature shift 30_to_25	+0.7
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.9
stress	Growth with Chloride 200 mM; with MOPS	+0.9
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+1.0
		remove PP_4541