Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_4516
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.8
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6
nitrogen source NAG (N); with MOPS -0.6
carbon source Delta-Nonalactone (C) -0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5
temperature shift Temperature shift 30_to_4; with MOPS -0.5
nitrogen source 2,6-diaminopimelic (N) -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.4
temperature shift Temperature shift 30_to_21; with MOPS -0.4
phage P. putida Sci small MOI 0.1 -0.4
carbon source Lignin Monomers (C) -0.4
stress Growth with Chloride 500 mM; with MOPS -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.4
carbon source 3-methyl-1-butanol (C) -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.4
stress R2A with Fusaric 480 ug/mL -0.4
phage P. putida Missley MOI 0.1 -0.4
nitrogen source D-2-Aminobutyric (N) -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.3
stress LB_noSalt with Chloride 1100 mM -0.3
carbon source L-Leucine (C) -0.3
micoeukaryotes Tetrahymena sp., Mixed culture-1 -0.3
reactor 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO. +0.3
carbon source carbon source 3-O-methyl-glucose 50 mM +0.3
temperature shift Temperature shift 30_to_34; with MOPS +0.3
pH pH 4 +0.3
temperature shift Temperature shift 10_to_21 +0.4
carbon source ferulate (C); with MOPS +0.4
temperature Growth at 25C; with MOPS +0.4
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PP_4516