Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4469
pH	Growth at pH6 and (C) Trisodium citrate	-1.2
no stress control	Growth with no stress	-0.8
temperature	Growth at 25C	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.8
phage	PUT8 MOI 0.1	-0.8
phage	P. putida Sci Big MOI 0.1	-0.7
pH	Growth at pH6 and (C) Trisodium citrate	-0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7
phage	PUT8 MOI 0.1	-0.6
carbon source	ferulate (C); with MOPS	-0.6
carbon source	Delta-Nonalactone (C)	-0.6
temperature shift	Temperature shift 30_to_25; with MOPS	-0.6
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.6
nitrogen source	Urea (N)	-0.6
nitrogen source	no extra (N); with MOPS	-0.5
temperature shift	Temperature shift 30_to_25	-0.5
carbon source	a-Ketoglutaric (C)	-0.5
temperature shift	Temperature shift 30_to_25	-0.5
phage	P. putida PUT10 MOI 10	-0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5
pH	pH 6	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.6
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	+0.7
nitrogen source	nitrogen source nitrite 0.5mM	+0.7
pH	Growth at pH6 and (C) D-Glucose	+0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.7
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