Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4421
carbon source	carbon source 3-O-methyl-glucose 50 mM	-0.5
carbon source	carbon source 2-Deoxy-D-glucose 10 mM	-0.4
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	-0.4
carbon source	Delta-Decalactone (C)	-0.3
pH	pH 7	-0.3
pH	Growth at pH7 and (C) D-Glucose	-0.3
carbon source	carbon source Bisabolol 45 mM	-0.3
carbon source	carbon source 4-vinylphenol 0.1 mM	-0.3
carbon source	carbon source 2-Deoxy-D-glucose 50 mM	-0.3
carbon source	carbon source Bisabolene 48.9 mM	-0.3
carbon source	carbon source 3-O-methyl-glucose 10 mM	-0.3
pH	pH 9	-0.3
carbon source	carbon source 4-vinylphenol 0.01 mM	-0.3
pH	pH 5	-0.2
stress	TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 1	-0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2
pH	Growth at pH9 and (C) D-Glucose	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	+0.3
pH	Growth at pH7 and (C) Trisodium citrate	+0.3
phage	P. putida Sci small MOI 0.1	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.3
temperature shift	Temperature shift 10_to_25; with MOPS	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.4
phage	P. putida Missley MOI 0.1	+0.6
phage	P. putida PUT 7 MOI 1	+0.7
		remove PP_4421