Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4317
temperature shift	Temperature shift 30_to_21; with MOPS	-2.0
carbon source	acetate (C)	-1.8
pH	Growth at pH7 and (C) Trisodium citrate	-1.8
pH	Growth at pH9 and (C) Trisodium citrate	-1.7
phage	P. putida Missley MOI 0.1	-1.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-1.4
phage	P. putida PUT 7 MOI 1	-1.4
phage	P. putida South MOI 10	-1.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-1.3
stress	R2A with Fusaric 480 ug/mL	-1.2
carbon source	L-Phenylalanine 5 mM (C)	-1.2
micoeukaryotes	Acanthamoeba sp., muxed culture-2	-1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-1.2
carbon source	3-Methyl-2-Oxobutanoic Acid (C)	-1.1
carbon source	Valerolactone (C)	-1.1
carbon source	Hexanoic (C)	-1.1
nitrogen source	2,6-diaminopimelic (N)	-1.1
carbon source	Decanoic (C)	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.0
carbon source	carbon source 2-Deoxy-D-glucose 10 mM	-1.0
pH	Growth at pH6 and (C) Trisodium citrate	+1.0
carbon source	Heptanoic (C)	+1.1
carbon source	L-Leucine (C)	+1.1
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	+1.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+1.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+1.7
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.7
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