Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4300
carbon source	carbon source 3-O-methyl-glucose 10 mM	-1.2
pH	pH 6	-1.0
pH	pH 9	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.7
nitrogen source	Urea (N)	-0.7
pH	Growth at pH9 and (C) Trisodium citrate	-0.6
nitrogen source	Propandiamine (N)	-0.6
pH	Growth at pH9 and (C) Trisodium citrate	-0.6
carbon source	acetate (C)	-0.6
carbon source	carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM	-0.6
nitrogen source	2,6-diaminopimelic (N)	-0.6
pH	pH 8	-0.6
nitrogen source	nitrite (N)	-0.6
carbon source	Valerolactone (C)	-0.5
stress	Growth with Chloride 500 mM; with MOPS	-0.5
temperature shift	Temperature shift 30_to_25; with MOPS	-0.5
r2a control with 0.2% methanol	R2A control with 0.2% methanol	-0.5
carbon source	2,3-Butanediol (C)	-0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.5
carbon source	Myristic (C)	+0.5
temperature	Growth at 30C	+0.5
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.5
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	+0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.6
pH	Growth at pH6 and (C) D-Glucose	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.8
		remove PP_4300