Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_4287
nitrogen source Adenine (N) -2.9
nitrogen source Adenine (N) -2.6
nitrogen source D-2-Aminobutyric (N) -1.3
nitrogen source DL-2-Aminobutyric (N) -1.0
stress R2A with Fusaric 240 ug/mL -0.8
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.8
nitrogen source DL-2-Aminobutyric (N) -0.7
carbon source ferulate (C); with MOPS -0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.7
carbon source D-Glucose (C) -0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.6
micoeukaryotes Tetrahymena sp., Mixed culture-1 -0.6
carbon source Sebacic (C) -0.6
dilutelb LB 0.1x with 55.5 mM D-Glucose -0.6
pH Valerolactone (C) pH 6.5 -0.6
microaerobic m9 microaerobic M9 -0.6
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM -0.6
carbon source 3-Hydroxypropionate (C) -0.6
pH pH 8 -0.6
phage P. putida South MOI 0.1 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.5
nitrogen source Hydantoin (N) -0.5
carbon source 2-Keto-D-gluconic hemicalcium salt (C) -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.5
carbon source benzoic (C) -0.5
carbon source Protocatechuic Acid (C) -0.5
nitrogen source DL-3-Aminoisobutyric (N) -0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.7
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PP_4287