Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4281
nitrogen source	D-2-Aminobutyric (N)	-0.9
carbon source	Delta-Nonalactone (C)	-0.6
nitrogen source	2,6-diaminopimelic (N)	-0.5
nitrogen source	NAG (N)	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.4
temperature shift	Temperature shift 30_to_10; with MOPS	-0.4
carbon source	Soil Extract with D-Glucose 10 mM; 30C; then outgrowth in LB	-0.4
carbon source	D-Glucose (C)	-0.4
pH	Growth at pH9 and (C) Trisodium citrate	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.4
supernatant control:fungal media	R2A with Vogels_fungal_media 0.2X	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4
nitrogen source	Urea (N)	-0.4
reactor_pregrowth	Adaptation in M9 media timecourse 4; day 2	-0.4
temperature shift	Temperature shift 10_to_25; with MOPS	-0.4
pH	Growth at pH9 and (C) Trisodium citrate	-0.3
nitrogen source	Urea (N); with MOPS	-0.3
carbon source	D-Glucose (C); with MOPS	-0.3
temperature	Growth at 34C	-0.3
temperature shift	Temperature shift 30_to_25; with MOPS	-0.3
carbon source	ferulate (C); with MOPS	-0.3
pH	Growth at pH7 and (C) Trisodium citrate	-0.3
pH	Growth at pH9 and (C) Trisodium citrate	-0.3
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.	-0.3
pH	Growth at pH6 and (C) Trisodium citrate	-0.3
nitrogen source	nitrate (N)	-0.3
nitrogen source	nitrogen source nitrite 1mM	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.3
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.4
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