Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

Or view all 1005 experiments or choose conditions

Group	Condition	PP_4234
nitrogen source	nitrogen source nitrite 1mM	-0.4
phage	P. putida Sci Big MOI 0.1	-0.4
phage	PUT 8 MOI 1	-0.4
carbon source	Valeric (C)	-0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.3
stress	Growth with Chloride 500 mM; with MOPS	-0.3
temperature shift	Temperature shift 30_to_21; with MOPS	-0.3
temperature shift	Temperature shift 10_to_34; with MOPS	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.3
phage	PUT8 MOI 10	-0.3
nitrogen source	nitrogen source nitrite 1mM	-0.3
nitrogen source	2,6-diaminopimelic (N)	-0.3
phage moi 100	Time6-phageFRS	-0.3
mixed community	Putida_ML5X with Paraburkholderia sabiae T6SS mutant	-0.3
reactor_pregrowth	Adaptation in M9 media timecourse 1; day 3	-0.3
r2a control with 0.2% methanol	R2A control with 0.2% methanol	-0.3
carbon source	2,3-Butanediol (C)	-0.2
carbon source	Rhamnogalacturonan - from potato (C)	-0.2
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.	-0.2
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.2
nitrogen source	nitrogen source nitrate 20mM	-0.2
stress	MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.2
carbon source	D-Fructose (C)	-0.2
carbon source	Ethanol (C)	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.2
nitrogen source	Urea (N)	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6
		remove PP_4234