Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4225
nitrogen source	Urea (N)	-1.8
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.0
stress	Growth with Chloride 500 mM	-0.9
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-0.9
nitrogen source	D-2-Aminobutyric (N)	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.9
pH	Growth at pH9 and (C) Trisodium citrate	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.8
carbon source	D-Lysine 10 mM (C)	-0.8
stress	Growth with Chloride 200 mM; with MOPS	-0.8
nitrogen source	nitrogen source Ammonium chloride 20mM	-0.8
phage	P. putida PUT 7 MOI 1	-0.8
carbon source	ferulate (C); with MOPS	-0.7
pH	Growth at pH6 and (C) D-Glucose	-0.7
nitrogen source	nitrogen source nitrate 5mM	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.7
stress	R2A with Fusaric 120 ug/mL	-0.7
carbon source	butyrate (C)	-0.7
micoeukaryotes	Acanthamoeba sp., muxed culture-2	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.7
pH	D-Glucose (C) pH 6	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.7
phage	PUT 8 MOI 1	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	+0.8
pH	pH 6	+0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.9
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