Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4224
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.2
phage	P. putida Sci small MOI 0.1	-1.1
phage	P. putida Sci small MOI 0.1	-1.1
pH	D-Glucose (C) pH 6.5	-0.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.8
carbon source	ferulate (C); with MOPS	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.7
carbon source	3-methyl-3-buten-1-ol 0.1 vol% (C)	-0.7
pH	Growth at pH6 and (C) Trisodium citrate	-0.6
carbon source	2-Methylbutanoic (C)	-0.6
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	+0.6
nitrogen source	NAG (N); with MOPS	+0.6
phage	P. put South MOI 10	+0.6
temperature shift	Temperature shift 30_to_10; with MOPS	+0.6
carbon source	Tween 20 (C)	+0.7
pH	pH 9	+0.7
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.7
carbon source	carbon source 4-vinylphenol 0.1 mM	+0.8
pH	pH 7	+0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.8
micoeukaryotes	Tetrahymena sp., Mixed culture-1	+0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.8
pH	Growth at pH7 and (C) Trisodium citrate	+0.8
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.0
carbon source	carbon source D-Glucose 55.5 mM	+1.0
pH	pH 6	+1.3
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