Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_4223
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -6.1
phage P. putida PUT 7 MOI 1 -4.1
r2a control R2A control -3.2
temperature shift Temperature shift 30_to_34; with MOPS -2.5
phage P. putida South MOI 10 -2.5
temperature Growth at 25C -2.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.7
pH Valerolactone (C) pH 6.5 -1.6
nitrogen source D-2-Aminobutyric (N) -1.6
carbon source DL-3-Hydroxybutyric (C) -1.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.5
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -1.5
carbon source D-Glucose (C) -1.5
nitrogen source Hippuric (N) -1.4
reactor_pregrowth Adaptation in M9 media timecourse 1; day 2 -1.3
temperature Growth at 30C -1.3
phage P. putida Sci small MOI 0.1 -1.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.3
nitrogen source Ammonium chloride (N) +1.3
carbon source carbon source 3-O-methyl-glucose 10 mM +1.3
carbon source carbon source 3-O-methyl-glucose 50 mM +1.3
pH Growth at pH8 and (C) Trisodium citrate +1.4
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM +1.4
carbon source carbon source 2-Deoxy-D-glucose 100 mM +1.4
pH pH 5 +1.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +1.5
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +1.6
carbon source ferulate (C); with MOPS +1.7
pH Valerolactone (C) pH 6.5 +1.9
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PP_4223