Fitness for 1 genes in Pseudomonas putida KT2440

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Group	Condition	PP_4168
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-1.2
carbon source	4-Aminobutyric 10 mM (C)	-1.2
nitrogen source	Urea (N); with MOPS	-1.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-1.0
carbon source	Tween 20 (C)	-1.0
temperature shift	Temperature shift 30_to_25	-1.0
reactor	48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.	-0.9
pH	Growth at pH9 and (C) Trisodium citrate	-0.9
phage	P. putida PUT 7 MOI 1	-0.9
carbon source	ferulate (C); with MOPS	-0.9
carbon source	Nonanoic (C)	-0.8
lb outgrowth control more dilute start	LB outgrowth control more dilute start	-0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.8
stress	Growth with Chloride 200 mM	-0.8
carbon source	5-Aminovaleric 10 mM (C)	-0.8
carbon source	Rhamnogalacturonan - from potato (C)	-0.8
temperature shift	Temperature shift 10_to_30; with MOPS	-0.7
pH	Growth at pH9 and (C) Trisodium citrate	-0.7
temperature shift	Temperature shift 30_to_34; with MOPS	-0.7
carbon source	benzoic (C)	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.7
carbon source	Glycerol (C)	+0.8
nitrogen source	2,6-diaminopimelic (N)	+0.8
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.8
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.8
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	+0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.8
nitrogen source	nitrate (N)	+0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.2
nitrogen source	D-2-Aminobutyric (N)	+1.3
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