Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4163
pH	Growth at pH7 and (C) D-Glucose	-1.3
phage	P. putida PUT 7 MOI 1	-1.2
nitrogen source	NAG (N); with MOPS	-1.1
temperature shift	Temperature shift 30_to_21; with MOPS	-1.0
nitrogen source	D-2-Aminobutyric (N)	-1.0
pH	pH 7	-0.9
temperature shift	Temperature shift 10_to_30; with MOPS	-0.9
phage	P. putida Sci small MOI 0.1	-0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.9
phage	P. putida South MOI 10	-0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.9
nitrogen source	Urea (N); with MOPS	-0.7
nitrogen source	D-2-Aminobutyric (N)	-0.7
no stress control	Growth with no stress	-0.7
phage	P. putida PUT10 MOI 10	-0.7
nitrogen source	nitrate (N)	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	+0.6
pH	Growth at pH6 and (C) Trisodium citrate	+0.6
nitrogen source	nitrite (N)	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.7
nitrogen source	nitrogen source nitrate 5mM	+0.7
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.8
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.	+0.8
mixed community	Putida_ML5X with Paraburkholderia sabiae T6SS mutant	+0.9
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.1
		remove PP_4163