Fitness for 1 genes in Pseudomonas putida KT2440

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Top 30 experiments (either direction), sorted by average fitness

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Group Condition PP_4124
carbon source Levulinic Acid (C) -4.0
carbon source Levulinic Acid (C) -3.7
carbon source 3-methyl-1-butanol (C) -3.5
carbon source Delta-Undecalactone (C) -3.3
carbon source Delta-Undecalactone (C) -3.2
carbon source 3-methyl-1-butanol 0.1 vol% (C) -3.2
carbon source Delta-Decalactone (C) -3.0
carbon source L-Lysine (C) -3.0
carbon source 3-methyl-1-butanol (C) -3.0
carbon source 1,3-Butandiol (C) -2.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -2.9
carbon source Ferulic Acid (C) -2.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -2.9
stress R2A with Polymyxin B sulfate 0.002 mg/ml -2.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -2.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -2.8
carbon source Acetate Carbon Source (20mM) -2.8
carbon source 4-Methyl-2-oxopentanoic (C) -2.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -2.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -2.6
carbon source Delta-Decalactone (C) -2.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -2.6
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -2.5
micoeukaryotes Dictyostellum sp.mixed culture-2 +2.6
reactor 24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO. +2.7
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay +2.8
reactor 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO. +3.3
nitrogen source DL-2-Aminobutyric (N) +3.5
nitrogen source DL-2-Aminobutyric (N) +3.6
micoeukaryotes C.elegans, mixed culture-2 +3.7
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PP_4124