Fitness for 1 genes in Pseudomonas putida KT2440

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Top 30 experiments (either direction), sorted by average fitness

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Group Condition PP_4065
carbon source 3-methyl-1-butanol (C) -6.3
carbon source 3-methyl-3-buten-1-ol 0.1 vol% (C) -6.3
carbon source 3-methyl-1-butanol 0.1 vol% (C) -6.3
carbon source 3-methyl-1-butanol 0.25 vol% (C) -5.8
carbon source 3-methyl-3-buten-1-ol 0.25 vol% (C) -5.8
carbon source 3-methyl-1-butanol (C) -5.5
carbon source 4-Methyl-2-oxopentanoic (C) -5.2
carbon source 4-Methyl-2-oxopentanoic (C) -5.1
carbon source 4-Methyl-2-oxopentanoic (C) -5.0
carbon source 4-Methyl-2-oxopentanoic (C) -4.8
carbon source 3-methyl-3-butenol (C) -4.6
carbon source L-Leucine (C) -4.5
carbon source 3-methyl-3-butenol (C) -3.9
carbon source L-Leucine (C) -3.3
carbon source L-Valine (C) -3.1
carbon source L-Leucine (C) -2.9
carbon source L-Valine (C) -2.6
carbon source L-Valine (C) -2.5
nitrogen source L-Leucine (N) -2.3
carbon source 3-Methyl-2-Oxobutanoic Acid (C) -2.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -2.1
carbon source 3-Methyl-2-Oxobutanoic Acid (C) -1.8
nitrogen source L-Leucine (N) -1.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -1.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -1.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -1.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.4
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PP_4065