Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4063
carbon source	3-methyl-1-butanol 0.25 vol% (C)	-3.6
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-3.3
carbon source	3-methyl-1-butanol (C)	-2.5
carbon source	3-methyl-1-butanol (C)	-2.1
carbon source	3-methyl-3-buten-1-ol 0.25 vol% (C)	-1.9
carbon source	3-methyl-3-buten-1-ol 0.1 vol% (C)	-1.8
carbon source	3-methyl-3-butenol (C)	-1.0
carbon source	3-methyl-3-butenol (C)	-0.9
carbon source	Valeric (C)	-0.8
phage	P. putida Sci Big MOI 0.1	-0.7
temperature	Growth at 30C; with MOPS	-0.6
carbon source	1-Pentanol (C)	-0.5
carbon source	1-Pentanol (C)	-0.5
pH	Growth at pH6 and (C) Trisodium citrate	-0.5
carbon source	Valeric (C)	-0.5
phage	P. put South MOI 10	-0.5
phage	P. putida Missley MOI 0.1	-0.4
carbon source	5-Aminovaleric 10 mM (C)	-0.4
nitrogen source	L-Valine (N)	-0.4
carbon source	4-Hydroxyvalerate (C) (40mM)	-0.4
nitrogen source	2,6-diaminopimelic (N)	-0.4
phage	P. putida Sci small MOI 0.1	-0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3
pH	Growth at pH7 and (C) D-Glucose	+0.4
carbon source	Tween 20 (C)	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.4
pH	Growth at pH6 and (C) Trisodium citrate	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.6
carbon source	ferulate (C); with MOPS	+0.7
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