Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4037
nitrogen source	Uracil (N)	-3.3
nitrogen source	Uracil (N)	-3.1
nitrogen source	3-aminobutyric (N)	-1.7
nitrogen source	3-aminobutyric (N)	-1.5
nitrogen source	Cytosine (N)	-0.7
nitrogen source	DL-3-Aminoisobutyric (N)	-0.6
nitrogen source	Cytosine (N)	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.5
stress	R2A with Fusaric 240 ug/mL	-0.5
carbon source	D-Glucose (C)	-0.4
phage	PUT 8 MOI 1	-0.4
phage	P. putida Sci Big MOI 0.1	-0.4
pH	Valerolactone (C) pH 6.5	-0.4
phage	P. put PUT 10 MOI 10	-0.4
nitrogen source	DL-3-Aminoisobutyric (N)	-0.4
carbon source	Delta-Undecalactone (C)	+0.3
carbon source	1,3-Butandiol (C)	+0.3
carbon source	DL-2-Aminoadipic 10 mM (C)	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.4
carbon source	Nonanoic (C)	+0.4
carbon source	Valeric (C)	+0.4
micoeukaryotes	Dictyostellum sp.mixed culture-2	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4
carbon source	Delta-Undecalactone (C)	+0.4
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay	+0.5
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay	+0.5
nitrogen source	D-2-Aminobutyric (N)	+0.5
no stress control	Growth with no stress	+0.5
carbon source	D-Mannose (C)	+0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.7
		remove PP_4037