Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4013
phage	P. putida Sci small MOI 0.1	-1.4
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-1.3
nitrogen source	Propiolactam (N)	-1.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.9
stress	Growth with Chloride 500 mM; with MOPS	-0.9
nitrogen source	nitrogen source nitrate 5mM	-0.8
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 4-benzoyl-L-phenylalanine 5 mM	-0.8
carbon source	D-Fructose (C)	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.7
phage	P. put South MOI 0.1	-0.7
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.7
pH	Growth at pH8 and (C) D-Glucose	-0.7
pH	Growth at pH6 and (C) D-Glucose	-0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7
r2a control with 0.2% methanol	R2A control with 0.2% methanol	-0.7
carbon source	Trisodium citrate 10 mM (C)	-0.6
no phage control	Time6-nophage	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.6
temperature shift	Temperature shift 10_to_30	+0.6
carbon source	2-Keto-D-gluconic hemicalcium salt (C)	+0.7
nitrogen source	NAG (N); with MOPS	+0.7
dilutelb	LB 0.1x with 55.5 mM D-Glucose	+0.7
carbon source	3-Hydroxydecanoic (C)	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.8
pH	Growth at pH7 and (C) D-Glucose	+0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+1.0
nitrogen source	2,6-diaminopimelic (N)	+1.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.2
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